LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. max (transcript)]
  • Home

Selected organism and genome annotation version

SpeciesGlycine max (soybeans, soybean)
Genome annotation Gm275Wm82a2V1
DescriptionGlycine Max, JGI, Gmax_275_Wm82.a2.v1
# of genomic sequences 147
# of genes 56,044
# of transcripts 88,647
RNA-seq experiments / conditions / samples 17 / 118 / 319
Choose sequence type for expression analysis 56,044 genes       or       88,647 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
Start from choosing samples


Search co-expressed genes; Build co-expressed gene modules
Start from choosing samples

Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
Click here


Click here