LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [C. arietinum (gene)]
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Selected organism and genome annotation version

SpeciesCicer arietinum (chickpea, garbanzo)
GenotypeICC 4958
Genome annotation CaV2
DescriptionCicer Arietinum, CSFL, Cicer arietinum ICC 4958 genome v2.0
# of genomic sequences 5,103
# of genes 30,257
# of transcripts 30,686
RNA-seq experiments / conditions / samples 6 / 33 / 79
Choose sequence type for expression analysis 30,257 genes       or       30,686 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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