LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [C. cajan (transcript)]
  • Home

Selected organism and genome annotation version

SpeciesCajanus cajan (pigeon pea)
Genome annotation CcV1
DescriptionCajanus Cajan, BGI, C.cajan_V1.0
# of genomic sequences 36,535
# of genes 50,122
# of transcripts 49,356
RNA-seq experiments / conditions / samples 1 / 4 / 4
Choose sequence type for expression analysis 48,650 genes       or       48,650 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
Start from choosing samples


Search co-expressed genes; Build co-expressed gene modules
Start from choosing samples

Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
Click here


Click here