LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [S. lycopersicum (transcript)]
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Selected organism and genome annotation version

SpeciesSolanum lycopersicum (tomato)
Genome annotation ITAG3.2
DescriptionSolanum lycopersicum, JGI, ITAG3.2
# of genomic sequences 13
# of genes 35,768
# of transcripts 35,768
RNA-seq experiments / conditions / samples 3 / 21 / 63
Choose sequence type for expression analysis 35,768 genes       or       35,768 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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