LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [V. radiata (transcript)]
  • Home

Selected organism and genome annotation version

SpeciesVigna radiata (mung bean)
Genome annotation Vr
DescriptionVigna Radiata, Seoul National Univ, VC1973A.gnm6.ann1
# of genomic sequences 412
# of genes 22,368
# of transcripts 23,181
RNA-seq experiments / conditions / samples 3 / 6 / 16
Choose sequence type for expression analysis 22,368 genes       or       23,181 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
Start from choosing samples


Search co-expressed genes; Build co-expressed gene modules
Start from choosing samples

Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
Click here


Click here