LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (transcript)]
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Selected organism and genome annotation version

SpeciesArabidopsis thaliana (thale cress, thale-cress, mouse-ear cress)
Genome annotation Araport11
DescriptionArabidopsis thaliana, JCVI, Araport11
# of genomic sequences 7
# of genes 34,293
# of transcripts 56,851
RNA-seq experiments / conditions / samples 13 / 132 / 245
Choose sequence type for expression analysis 27,876 genes       or       52,556 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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