LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [T. subterraneum (gene)]
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Selected organism and genome annotation version

SpeciesTrifolium subterraneum (sub clover)
Genome annotation TsuV1.1
DescriptionTrifolium Subterraneum, Lab of Plant Genome Informatics Department of Plant Genome Research Kazusa DNA Research Institut, TSUd_r1.1
# of genomic sequences 27,424
# of genes 42,704
# of transcripts 42,704
RNA-seq experiments / conditions / samples 1 / 4 / 12
Choose sequence type for expression analysis 41,942 genes       or       41,942 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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