LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [P. trichocarpa (transcript)]
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Selected organism and genome annotation version

SpeciesPopulus trichocarpa (western balsam poplar, black cottonwood)
Genome annotation PtV3.1
DescriptionPopulus Trichocarpa, JGI, Ptrichocarpa_444_v3.1
# of genomic sequences 415
# of genes 42,950
# of transcripts 63,498
RNA-seq experiments / conditions / samples 4 / 32 / 121
Choose sequence type for expression analysis 42,950 genes       or       63,498 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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