LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Description Contact Reference Conditions
Transcriptome Characterization of developing bean (Phaseolus vulgaris L.) pods from two genotypes with contrasting seed zinc concentrations. Dry bean (Phaseolus vulgaris L.) seeds are a rich source of dietary zinc, especially for people consuming plant-based diets. Within P. vulgaris there is at least two-fold variation in seed Zn concentration. Genetic studies have revealed seed Zn differences to be controlled by a single gene in two closely related navy bean genotypes, Albion and Voyager. In this study, these two genotypes were grown under controlled fertilization conditions and the Zn concentration of various plant parts were dete......[More] Michigan State University
Transcript Profiling of Common Bean Embryo Regions at Globular Stage Using Laser Capture Microdissection Coupled with RNA-Seq We used laser capture microdissection (LCM) to capture globular stage common bean embryo proper and suspensor, and profiled the transcriptome of these two embryo regions using next-generation sequencing. Our long-term goal is to understand the region-specific differentiation processes that occur during early embryo development and how genes are activated specifically in the suspensor and embryo proper. Overall design: Illumina sequencing of transcripts from laser-captured embryo proper and suspe......[More] Molecular, Cell and Developmental Biology, University of California, Los Angeles
Host Transcriptional Profiling at Early and Later Stages of the Compatible Interaction Between Phaseolus vulgaris and Meloidogyne incognita Twelve transcriptional libraries of Phaseolus vulgaris roots infected by M. incognita. Assessments were performed at two time points, 4 and 10 days after inoculation (DAI). The transcriptional data were obtained by high-throughput Illumina sequencing platform. USP/ESALQ 4
Transcriptome analysis of salt tolerant common bean (Phaseolus vulgaris L.) under saline conditions Transcription profiling of a salt tolerant common bean variety to get insight of the salt responsive genes and regulatory pathways. Bogazici University 6