LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [L. angustifolius (transcript)]
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Selected organism and genome annotation version

SpeciesLupinus angustifolius (narrow-leaved blue lupine)
Genome annotation LaV1
DescriptionLupinus Angustifolius, CSIRO-UWA Laboratory for Molecular Plant Pathology and Crop Genomics, lupan.Tanjil.gnm1.ann1.nnV9
# of genomic sequences 1,682
# of genes 33,072
# of transcripts 33,072
RNA-seq experiments / conditions / samples 1 / 6 / 6
Choose sequence type for expression analysis 33,072 genes       or       33,072 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
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Search co-expressed genes; Build co-expressed gene modules
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Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
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