LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [L. japonicus (transcript)]
  • Home

Selected organism and genome annotation version

SpeciesLotus japonicus
Genome annotation LjMG20V3
DescriptionLotus Japonicus, JCVI, Lotusjaponicus_MG20_v3.0
# of genomic sequences 9
# of genes 41,333
# of transcripts 49,941
RNA-seq experiments / conditions / samples 5 / 16 / 48
Choose sequence type for expression analysis 41,332 genes       or       49,940 transcripts

Expression Profile

Normalize and compare gene expression level; Visualize gene expression level; Search genes by specified keywords, Coordinates and expression pattern
Start from choosing samples


Search co-expressed genes; Build co-expressed gene modules
Start from choosing samples

Differential Expression

Identify differentially expressed genes between two conditions/treatments
Choosing conditions

Pathway Enrichment Analysis

Identify possible function of gene group from your input or DE analysis
Gene Ontology analysis
KEGG pathway analysis

Homolog mapping

Mapping gene/transcript/CDS/protein to its correspondence in other genomes referring to their functional annotation, such as homolog or panther family ID
Click here


Click here