psRNATarget:
A Plant Small RNA Target Analysis Server (2017 Update)
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Allium_cepa (Onion), unigene, DFCI Gene Index (ONGI), version 2,released on 2008_07_17
Amaranthus hypochondriacus (Prince-of-Wales feather), transcript, JGI genomic project, Phytozome 12, 315 v1.0
Amborella trichopoda, transcript, JGI genomic project, Phytozome 12, 291_v1.0
Ananas comosus (pineapple), transcript, JGI genomic project, Phytozome 12, 321 v3
Aquilegia (columbine), unigene, DFCI Gene Index (AQGI), version 2.1,released on 2008_06_06
Aquilegia caerulea, transcript, JGI genomic project, Phytozome 11, 195 v1.1
Aquilegia caerulea, transcript, JGI genomic project, Phytozome 12, 322_v3.1
Arabidopsis halleri (arabette de Haller), transcript, JGI genomic project, Phytozome 12, 264_v1.1
Arabidopsis lyrata (Lyrate rockcress), transcript, JGI genomic project, Phytozome, phytozome v10,internal number 107
Arabidopsis lyrata (Sand Cress), transcript, JGI genomic project, Phytozome 12, 384_v2.1
Arabidopsis thaliana, transcript, removed miRNA gene, TAIR, version 10,released on 2010_12_14
Arabidopsis thaliana, unigene, DFCI Gene Index (AGI), version 15,released on 2010_04_08
Arabidopsis thaliana, genomic DNA, 3.4K segments from strand with 0.4K overlapped region, TAIR, released on 2004_01_22
Arabidopsis thaliana, transcript, JGI genomic project, Phytozome 12, 167_TAIR10
Arabidopsis thaliana (mouseear cress), cDNA, Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and......
Arabidopsis thaliana (mouseear cress), cDNA, non protein coding transcripts in fasta format, Araport, Araport11
Beta vulgaris (beet), unigene, DFCI Gene Index (BVGI), version 4,released on 2011_03_17
Boechera stricta (Drummond's rockcress), transcript, JGI genomic project, Phytozome 11, 278 v1.2
Botrytis cinerea (noble rot), transcript, cDNA library, ASM83294v1
Brachypodium distachyon (purple false brome), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 192
Brachypodium distachyon, transcript, JGI genomic project, Phytozome 12, 314_v3.1
Brachypodium distachyon (purple false brome), transcript, JGI genomic project, Phytozome, phytozome v10
Brachypodium distachyon (purple false brome), unigene, DFCI Gene Index (BDGI), version 1,released on 2010_05_26
Brachypodium stacei, transcript, JGI genomic project, Phytozome 12, 316_v1.1
Brassica napus (rape), unigene, DFCI Gene Index (BNGI), version 5,released on 2011_03_18
Brassica napus (rape or oilseeds rape), transcript, , V5
Brassica napus (oilseed rape), transcript, , v4.1
Brassica oleracea, transcript, JGI genomic project, Phytozome 12, 446_v1.0
Brassica oleracea (cabbage,broccoli), transcript, Brassica database (BRAD), Boleracea_genome_data_v1.0
Brassica rapa, cds, de novo scaffolds assembly, Brassica database (BRAD), version 1.1,released on 2011_08_30
Brassica rapa, transcript, JGI genomic project, Phytozome 12, 277_v1.3
Cajanus cajan (pigeon pea), transcript, , V1.0
Candidatus Liberibacter asiaticus, transcript, ,
Capsella grandiflora, transcript, JGI genomic project, Phytozome 12, 266_v1.1
Capsella rubella (pink shepherd's-purse), transcript, JGI genomic project, Phytozome 12, 183_v1.0
Capsicum annuum, 454 unigene, 454 transcripts assembly, Capsicum Transcriptome DB, unknown version
Capsicum annuum (Pepper), unigene, DFCI Gene Index (CAGI), version 4,released on 2009_05_21
Capsicum annuum L. , CDS, , v2
Carica papaya (Papaya), unigene, DFCI Gene Index (CAPAGI), version 1,released on 2010_05_27
Carica papaya (Papaya), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 113
Carica papaya (papaya pawpaw tree melon), transcript, JGI genomic project, Phytozome 12, 113_ASGPBv0.4
Chlamydomonas reinhardtii (Green algae), unigene, DFCI Gene Index (CHRGI), version 8,released on 2011_03_21
Chlamydomonas reinhardtii (Green algae), transcript, JGI genomic project, Phytozome, phytozome v10.0,internal number 281
Chlamydomonas reinhardtii (Green algae), mRNA, augustus gene model prediction, JGI-Assembly v4, augustus u9
Chlamydomonas reinhardtii, transcript, JGI genomic project, Phytozome 12, 281_v5.5
Cicer arietinum (chickpea), transcriptome sequence, nipgr,
Cicer arietinum (chickpea), cds, ICGGC draft genome sequencing project, version 1
Citrullus lanatus (watermelon), transcript, Cucurbit Genomics Database, version 1
Citrus clementina (Clementine), unigene, DFCI Gene Index (CICLGI), version 2,released on 2009_05_22
Citrus clementina (Clementine), transcript, JGI genomic project, Phytozome, version 1
Citrus clementina , transcript, JGI genomic project, Phytozome 11, 182 v1.0
Citrus sinensis (Orange), transcript, JGI genomic project, Phytozome, phytozome V10 csinensis v1.1
Citrus sinensis (Orange), cDNA, , Latest update: 2012_11_29
Citrus sinensis (Orange), unigene, DFCI Gene Index (CSGI), version 1,released on 2008_06_25
Citrus sinensis (sweet orange group), transcript, JGI genomic project, Phytozome 12, 154_v1.1
Coccomyxa subellipsoidea (Green microalga), transcript, JGI genomic project, Phytozome 12, 169_227_v2.0
Coffea canephora (coffee), unigene, SGN unigene, SGN, version 3
Coffea canephora (coffee), unigene, DFCI Gene Index (COCAGI), version 3,released on 2011_03_18
Coprinopsis cinerea (gray shag), transcript, JGI genomic project, v1
Cucumis Melo (Muskmelon ), transcript, MELONOMICS project, version 1
Cucumis Melo (Muskmelon ), unigene, MELONOMICS project,
Cucumis Melo (Muskmelon ), unigene, International Cucurbit Genomics Initiative (ICuGI), version 4
Cucumis sativus (cucumber), cds, Cucumber genome sequencing project, version 2
Cucumis sativus, transcript, JGI genomic project, Phytozome 12, 122_v1.0
Cuscuta pentagona, unigene, Cuscuta pentagona, de-novo assembly of NGS RNA-seq reads, Sinha Lab,Department of Plant Biology, Life ......
Daucus carota (wild carrot), transcript, JGI genomic project, Phytozome 12, 388_v2.0
Dunaliella salina (Green alga), transcript, JGI genomic project, Phytozome 12, 325_v1.0
Ectocarpus siliculosus (Brown algae), unigene, DFCI Gene Index (BAGI), version 1,released on 2010_05_27
Elaeis guineensis (African oil palm), transcript, (HD-40537) predicted mRNA Fasta file from Elaeis guineensis genome from NCBI,
Eucalyptus grandis (Flooded gum or Rose gum), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 201
Eucalyptus grandis (Flooded gum or Rose gum), unigene, EST contig, ,
Eucalyptus grandis (flooded gum or rose gum), transcript, JGI genomic project, Phytozome 12, 297_v2.0
Euphorbia esula (Leafy spurge), unigene, DFCI Gene Index (EUESGI), version 1,released on 2008_06_30
Eutrema salsugineum (saltwater cress), transcript, JGI genomic project, Phytozome 12, 173_v1.0
Festuca arundinacea (tall fescue), unigene, DFCI Gene Index (FAGI), version 3,released on 2010_04_07
Festuca pratensis (Meadow ryegrass), unigene, DFCI Gene Index(MRGI), version 1,released on 2010_05_28
Fragaria vesca, transcript, JGI genomic project, Phytozome 12, 226_v1.1
Glycine max (soybean), unigene, DFCI Gene Index (GMGI), version 16,released on 2011_03_31
Glycine max (soybean), transcript, JGI genomic project, Phytozome 12, Wm82.a2.v1
Gossypium (cotton), unigene, DFCI Gene Index (CGI), version 11,released on 2011_03_22
Gossypium arboreum (tree cotton), cds, Institute of cotton resrarch of CAAS, version 2
Gossypium hirsutum, cds, , v1.1
Gossypium raimondii (cotton_raimondii), unigene, DFCI Gene Index (GORAGI), version 1,released on 2008_07_02
Gossypium raimondii (cotton_raimondii), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 221
Gossypium raimondii (cotton_raimondii), cds, Chinese Academy of Agricultural Sciences,Cotton Research Institute,
Gossypium raimondii (diploid cotton), transcript, JGI genomic project, Phytozome 12, 221_v2.1
Helianthus annuus (Sunflower), unigene, DFCI Gene Index (HAGI), version 6,released on 2009_05_24
Homo sapiens (human), transcript, Human genomic sequencing project,
Hordeum vulgare (barley), unigene, DFCI Gene Index (HVGI), version 12,released on 2011_03_19
Ipomoea nil (Morning glory), unigene, DFCI Gene Index (IPNIGI), version 1,released on 2008_06_30
Kalanchoe fedtschenkoi, transcript, JGI genomic project, Phytozome 12, 382_v1.1
Kalanchoe laxiflora, transcript, JGI genomic project, Phytozome 12, 309_v1.1
Lactuca sativa (Lettuce), unigene, DFCI Gene Index (LSGI), version 3,released on 2008_07_02
Lactuca serriola (Prickly lettuce), unigene, DFCI Gene Index (LASEGI), version 1,released on 2008_06_28
Linum usitatissimum (flax or linseed), unigene, Unigene Library,
Linum usitatissimum (flax or linseed), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 200
Linum usitatissimum (common flax or linseed), transcript, JGI genomic project, Phytozome 12, 200_v1.0
Lotus japonicus (lotus), unigene, DFCI Gene Index (LJGI), version 6,released on 2010_05_18
Magnaporthe oryzae (rice blast fungus), transcript, Broad institute, Magnaporthe grisea Database, Magnaporthe grisea Assembly 6
Malus domestica (Apple), transcript, JGI genomic project, Phytozome 11, 196 v1.0
Malus x domestica (apple), cds, predicted consensus gene set CDS sequences, , version 1
Malus x domestica (apple), genomic DNA, , version 1
Malus x domestica (apple), transcript, Malus_x_domestica-genome_GDDH13_v1.1, , v1.1
Malus_x_domestica (apple), unigene, DFCI Gene Index (MDGI), version 3,released on 2010_04_08
Manihot esculenta (Cassava), unigene, DFCI Gene Index (MAESGI), version 1,released on 2010_05_28
Manihot esculenta, transcript, JGI genomic project, Phytozome 12, 305_v6.1
Marchantia polymorpha, transcript, JGI genomic project, Phytozome 12, 320_v3.1
Medicago truncatula (Barrel Medic), unigene, DFCI Gene index (MTGI), version 11,released on 2011_03_23
Medicago truncatula (Barrel Medic), transcript, Mt3.5v4 splice transcripts, ,
Medicago truncatula (Barrel Medic), transcript, Mt4.0v1 spliced transcripts, IMGAG, Mt4.0V1
Medicago truncatula, transcript, JGI genomic project, Phytozome 12, 285_Mt4.0v1
Mesembryanthemum crystallinum (ice plant), unigene, DFCI Gene Index (MCGI), version 5,released on 2008_06_19
Micromonas pusilla, transcript, JGI genomic project, Phytozome 12, CCMP1545_228_v3.0
Micromonas sp, transcript, JGI genomic project, Phytozome 12, RCC299_229_v3.0
Mimulus guttatus (Spotted monkey flower), unigene, DFCI Gene Index (MIGUGI), version 1,released on 2010_05_27
Mimulus guttatus, transcript, JGI genomic project, Phytozome 12, 256_v2.0
Mimulus lewisii (monkey flower), transcript, , LF10 Transcriptome v1.2
Morchella esculenta (common morel), transcript, JGI genomic project, Phytozome, phytozome v9.0,internal number 147
Morus notabilis (mulberry), cds, ,
Musa acuminata (banana), cds, all gene coding sequences, Banana Genome Hub, version 1
Musa acuminata (banana), transcript, JGI genomic project, Phytozome 12, 304_v1
Musa acuminata (banana), transcript, Banana Genome Hub, v2
Nicotiana benthamiana, unigene, DFCI Gene Index (NBGI), version 4,released on 2010_04_09
Nicotiana benthamiana, transcript, draft genome 0.4.4, ,
Nicotiana benthamiana, transcript, Niben101,
Nicotiana benthamiana, transcript, De Novo Transcriptome Sequence Assembly, Transcriptome assembly v5.1, primary transcripts corre......
Nicotiana tabacum (tobacco), unigene, DFCI Gene Index (NTGI), version 7,released on 2011_04_01
Nicotiana tabacum (tobacco), unigene, SGN unigene,
Oropetium thomaeum, transcript, JGI genomic project, Phytozome 12, 386 v1.0
Oryza Sativa (rice), cDNA, rice genome annotation project, version7.0
Oryza sativa (rice), transcript, TIGR genome cDNA OSA1 Release 5(OSA1R5), version 5
Oryza sativa (rice), transcript, RAP-DB, version 1.0
Oryza sativa (rice), unigene, DFCI Gene index (OSGI), version 19,released on 2011_03_28
Oryza sativa (rice), genomic DNA, 3.4K segments from strand with 0.4K overlapped region, ,
Oryza sativa (rice), transcript, MSU Rice Genome Annotation, version 7
Oryza sativa (rice), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 193
Oryza sativa (rice), transcript, JGI genomic project, Phytozome 12, 323_v7.0
Oryza sativa (rice), transcript, JGI genomic project, Phytozome, phytozome v10
Oryza sativa (rice), transcript, cDNA library, Ensembl,
Oryza sativa (rice), transcript, BGI rice information syst, 9311
Ostreococcus lucimarinus (Ostreococcus), transcript, JGI genomic project, Phytozome 12, 231_v2.0
Panicum hallii, transcript, JGI genomic project, Phytozome 12, 308_v2.0
Panicum virgatum (switchgrass), unigene, DFCI Gene Index (PAVIGI), version 2,released on 2011_03_24
Panicum virgatum (switchgrass), transcript, JGI genomic project, Phytozome 12, 273_v1.1
Panicum virgatum (Switchgrass), transcript, JGI, Phytozome v12, v4.1
Petunia hybrida (Petunia), unigene, DFCI Gene Index (PHGI), version 3,released on 2011_03_17
Phaseolus coccineus (Scarlet bean), unigene, DFCI Gene Index (PCGI), version 1,released on 2009_05_27
Phaseolus vulgaris (bean), unigene, DFCI Gene index (PHVGI), version 4,released on 2011_03_24
Phaseolus vulgaris, transcript, JGI genomic project, Phytozome 11, 218 v1.0
Phaseolus vulgaris, transcript, JGI genomic project, Phytozome 12, 442_v2.1
Phoenix dactylifera (date palm), transcript, Date Palm Genome Draft Assembly, Version 3
Phyllostachys heterocycla (Moso Bamboo), cds, National Center for Gene Research of Chinese Academy of Sciences, Version 1
Phyllostachys heterocycla (Moso Bamboo), cds_DNA, National Center for Gene Research of Chinese Academy of Sciences, Version 1
Physcomitrella patens (moss), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 152
Physcomitrella patens (spreading earthmoss), transcript, JGI genomic project, Phytozome 12, 318_v3.3
Physcomitrella patens (moss), transcript, JGI genomic project, Phytozome, phytozome v10
Physcomitrella patens (moss), unigene, DFCI Gene Index (PPSPGI), version 1,released on 2009_05_26
Phytophthora cinnamomi (water mould), transcript, JGI genomic project, Phytozome, phytozome v10
Picea (Spruce), unigene, DFCI Gene Index (SGI), version 5,released on 2011_03_30
Pinus (pine), unigene, DFGI Gene Index (PGI), version 9,released on 2011_03_26
Pinus pinaster (maritime pine), unigene, Sustain Pine DB, version 3.0
Populus trichocarpa (poplar), unigene, DFCI Gene Index (PPLGI), version 5,released on 2010_04_16
Populus trichocarpa (poplar), genomic DNA, Genome Assembly R1.0, 3.4K segments from strand with 0.4K overlapped region, JGI genom......
Populus trichocarpa, transcript, JGI genomic project, Phytozome 12, 210_v3.0
Populus trichocarpa (poplar), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 156
Prunus mume (Chinese plum), cds, Beijing Forestry University,
Prunus persica (peach), unigene, DFCI Gene Index (PRPEGI), version 2,released on 2009_05_26
Prunus persica (peach), transcript, JGI genomic project, Phytozome 12, 298_v2.1
Punica granatum (pomegranate), transcript, GCA_002201585.1_ASM220158v1, , v1
Quercus (oak), unigene, DFCI Gene Index (OGI), version 2,released on 2011_03_23
Raphanus sativus (Radish), unigene, DFCI Gene Index (RSGI), version 1,released on 2010_05_27
Raphanus sativus (Radish), cds, Kazusa DNA Research Institute, version 1.0
Ricinus communis, transcript, JGI genomic project, Phytozome 12, 119_v0.1
Saccharum officinarum (sugarcane), unigene, DFCI Gene Index (SOGI), version 3,released on 2010_04_09
Salix purpurea, transcript, JGI genomic project, Phytozome 12, 289_v1.0
Secale cereale (rye), unigene, DFCI Gene Index (RYEGI), version 4,released on 2008_07_03
Selaginella moellendorffii (club mosses), unigene, DFCI Gene Index (CMGI), version 1,released on 2010_05_26
Selaginella moellendorffii, transcript, JGI genomic project, Phytozome 12, 91_v1.0
Setaria italica (foxtail millet), cds, BGI sequencing project,
Setaria italica (foxtail millet), cds, JGI genomic project, phytozome v9.0,internal number 164
Setaria italica (Foxtail millet), transcript, JGI genomic project, Phytozome 12, 312_v2.2
Setaria italica (foxtail millet), transcript, JGI genomic project, phytozome v10
Setaria viridis, transcript, JGI genomic project, Phytozome 12, 311_v1.1
Solanum Lycopersicon (tomato Lycopersicon ), unigene, Lycopersicon Combined (Tomato) Unigenes, SGN Unigene, unknown version
Solanum Lycopersicon, transcript, SGN mRNA sequences, SGN genomic sequencing project, released on 2011_05_08
Solanum lycopersicum (tomato), transcript, cDNA library, version 2.4
Solanum lycopersicum (tomato), transcript, JGI genomic project, Phytozome 11, 225 iTAGv2.3
Solanum lycopersicum (tomato), unigene, SGN unigene,
Solanum lycopersicum (tomato), unigene, DFCI Gene Index (LGI), version 13,released on 2010_04_13
Solanum lycopersicum (tomato), transcript, JGI genomic project, Phytozome 12, 390_ITAG2.4
Solanum lycopersicum (tomato), transcript, cDNA library, ITAG3.1
Solanum lycopersicum (tomato), cDNA, , v3.2
Solanum melongena (eggplant), unigene, DFCI Gene Index (SOMEGI), version1,released on 2010_05_28
Solanum tuberosum (potato), unigene, DFCI Gene Index (STGI), version 13,released on 2010_04_16
Solanum tuberosum (potato), transcript, Group Phureja DM1-3 516R44 (CIP801092) Genome 3.4 transcripts, ,
Solanum tuberosum (potato), transcript, JGI genomic project, Phytozome 11, 206 v3.4
Solanum tuberosum (potato), transcript, JGI genomic project, Phytozome 12, 448_v4.03
Sorghum bicolor (sorghum), transcript, JGI genomic project, Phytozome, phytozome v10
Sorghum bicolor (Sorghum), unigene, DFCI Gene Index (SBGI), version 9,released on 2008_07_25
Sorghum bicolor, transcript, JGI genomic project, Phytozome 12, 313_v3.1
Sphagnum fallax (flat-topped bogmoss), transcript, JGI genomic project, Phytozome 12, 310_v0.5
Sphagnum fallax (flat-topped bogmoss), transcript, JGI genomic project, Phytozome 11, 310_v0.5
Spirodela polyrhiza, transcript, JGI genomic project, Phytozome 12, 290_v2
Spirodela polyrhiza (duckweed), transcript, waksman institute of Microbiology,
Striga hermonthica (Purple witchweed), unigene, DFCI Gene Index (SHGI), version 1,released on 2010_05_27
Thellungiella halophila (salt cress), transcript, JGI genomic project, Phytozome, phytozome v9.0,internal number 173
Thellungiella halophila (salt cress), unigene, ESTContig on PlantGDB, PlangGDB unigene, released on 2009_01_16
Theobroma cacao (cocoa), unigene, DFCI Gene Index (TCAGI), version 3,released on 2009_05_21
Theobroma cacao (cacao tree), transcript, JGI genomic project, Phytozome 12, 233_v1.1
Trifolium pratense (red clover), transcript, JGI genomic project, Phytozome 12, 385 v2
Triphysaria, unigene, DFCI Gene Index (TRIPHGI), version 1,released on 2008_08_15
Triphysaria versicolor, unigene, DFCI Gene Index (TVERGI), version 2,released on 2008_06_28
Triticum aestivum (wheat), unigene, DFCI Gene Index (TAGI), version 12,released on 2010_04_18
Triticum aestivum (wheat), cDNA, EnsemblPlants, release-31
Triticum aestivum (bread wheat), transcript, cDNA library, TGACv1
Triticum aestivum (bread wheat), cDNA, EnsemblPlant, release 39
Triticum aestivum (bread wheat), cDNA, EnsemblPlant, release 40
Vaccinium macrocarpon (American cranberry), transcript, ,
Vaccinium macrocarpon (American cranberry), transcript, De Novo Transcriptome Sequence Assembly, de novo transcriptome assembly ve......
Vicia Faba (broad bean), transcript, CSFL Faba Bean RefTrans combines published RNA-Seq and EST data sets to create a reference tr......
Vicia Faba (broad bean), transcript, CSFL Faba Bean RefTrans combines published RNA-Seq and EST data sets to create a reference tr......
Vigna unguiculata (cowpea), unigene, DFCI Gene Index (VUGI), version 1,released on 2010_05_27
Vitis vinifera (grape), unigene, DFCI Gene Index (VVGI), version 8,released on 2011_04_02
Vitis vinifera (grape), transcript, JGI genomic project, Phytozome, phytozome v9, internal number 145
Vitis vinifera (grape vine), transcript, JGI genomic project, Phytozome 12, 145_Genoscope.12X
Volvox carteri (green algae), unigene, DFCI Gene Index (VCGI), version 1, released on 2010_05_28
Volvox carteri (Green alga), transcript, JGI genomic project, Phytozome 12, 317_v2.1
Zea Mays (corn), cDNA, , AGPv4
Zea mays (maize), unigene, DFCI Gene Index (ZMGI), version 19,released on 2009_06_05
Zea mays (maize), cds, PlangGDB genomic project,
Zea mays (maize), transcript, NSF-funded Maize Genome Sequencing Project, Release 5a , filtered set
Zea mays (maize), transcript, EMBL-EBI Ensembl Genomes, AGPv3.22
Zea mays (corn), transcript, JGI genomic project, Phytozome 12, Ensembl-18_2010-01-MaizeSequence
Zea mays (corn), transcript, JGI genomic project, Phytozome 12, PH207_443_v1.1
Zostera marina, transcript, JGI genomic project, Phytozome 12, 324 v2.2
brassica napus (rape), transcript, Brassica database (BRAD), Brapa_genome_data_v1.5
brassica napus (rape), transcript, , version 5
fusarium oxysporum (fusarium oxysporum), transcript, Broad institute, 4287
vitis vinifera (wine grape), transcript, Wine grape genomic sequencing project, V1
vitis vinifera (grape), transcript, university of Padua CRIBI Genomics, V2.1