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Allium_cepa (Onion), unigene, DFCI Gene Index (ONGI), version 2,released on 2008_07_17 Amaranthus hypochondriacus (Prince-of-Wales feather), transcript, JGI genomic project, Phytozome 12, 315 v1.0 Amborella trichopoda, transcript, JGI genomic project, Phytozome 12, 291_v1.0 Ananas comosus (pineapple), transcript, JGI genomic project, Phytozome 12, 321 v3 Aquilegia (columbine), unigene, DFCI Gene Index (AQGI), version 2.1,released on 2008_06_06 Aquilegia caerulea, transcript, JGI genomic project, Phytozome 11, 195 v1.1 Aquilegia caerulea, transcript, JGI genomic project, Phytozome 12, 322_v3.1 Arabidopsis halleri (arabette de Haller), transcript, JGI genomic project, Phytozome 12, 264_v1.1 Arabidopsis lyrata (Lyrate rockcress), transcript, JGI genomic project, Phytozome, phytozome v10,internal number 107 Arabidopsis lyrata (Sand Cress), transcript, JGI genomic project, Phytozome 12, 384_v2.1 Arabidopsis thaliana, transcript, removed miRNA gene, TAIR, version 10,released on 2010_12_14 Arabidopsis thaliana, unigene, DFCI Gene Index (AGI), version 15,released on 2010_04_08 Arabidopsis thaliana, genomic DNA, 3.4K segments from strand with 0.4K overlapped region, TAIR, released on 2004_01_22 Arabidopsis thaliana, transcript, JGI genomic project, Phytozome 12, 167_TAIR10 Arabidopsis thaliana (mouseear cress), cDNA, Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and...... Beta vulgaris (beet), unigene, DFCI Gene Index (BVGI), version 4,released on 2011_03_17 Boechera stricta (Drummond's rockcress), transcript, JGI genomic project, Phytozome 11, 278 v1.2 Botrytis cinerea (noble rot), transcript, cDNA library, ASM83294v1 Brachypodium distachyon (purple false brome), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 192 Brachypodium distachyon, transcript, JGI genomic project, Phytozome 12, 314_v3.1 Brachypodium distachyon (purple false brome), transcript, JGI genomic project, Phytozome, phytozome v10 Brachypodium distachyon (purple false brome), unigene, DFCI Gene Index (BDGI), version 1,released on 2010_05_26 Brachypodium stacei, transcript, JGI genomic project, Phytozome 12, 316_v1.1 Brassica napus (rape), unigene, DFCI Gene Index (BNGI), version 5,released on 2011_03_18 Brassica napus (rape or oilseeds rape), transcript, , V5 Brassica napus (oilseed rape), transcript, , v4.1 Brassica oleracea, transcript, JGI genomic project, Phytozome 12, 446_v1.0 Brassica oleracea (cabbage,broccoli), transcript, Brassica database (BRAD), Boleracea_genome_data_v1.0 Brassica rapa, cds, de novo scaffolds assembly, Brassica database (BRAD), version 1.1,released on 2011_08_30 Brassica rapa, transcript, JGI genomic project, Phytozome 12, 277_v1.3 Cajanus cajan (pigeon pea), transcript, , V1.0 Candidatus Liberibacter asiaticus, transcript, , Capsella grandiflora, transcript, JGI genomic project, Phytozome 12, 266_v1.1 Capsella rubella (pink shepherd's-purse), transcript, JGI genomic project, Phytozome 12, 183_v1.0 Capsicum annuum, 454 unigene, 454 transcripts assembly, Capsicum Transcriptome DB, unknown version Capsicum annuum (Pepper), unigene, DFCI Gene Index (CAGI), version 4,released on 2009_05_21 Carica papaya (Papaya), unigene, DFCI Gene Index (CAPAGI), version 1,released on 2010_05_27 Carica papaya (Papaya), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 113 Carica papaya (papaya pawpaw tree melon), transcript, JGI genomic project, Phytozome 12, 113_ASGPBv0.4 Chlamydomonas reinhardtii (Green algae), unigene, DFCI Gene Index (CHRGI), version 8,released on 2011_03_21 Chlamydomonas reinhardtii (Green algae), transcript, JGI genomic project, Phytozome, phytozome v10.0,internal number 281 Chlamydomonas reinhardtii (Green algae), mRNA, augustus gene model prediction, JGI-Assembly v4, augustus u9 Chlamydomonas reinhardtii, transcript, JGI genomic project, Phytozome 12, 281_v5.5 Cicer arietinum (chickpea), transcriptome sequence, nipgr, Cicer arietinum (chickpea), cds, ICGGC draft genome sequencing project, version 1 Citrullus lanatus (watermelon), transcript, Cucurbit Genomics Database, version 1 Citrus clementina (Clementine), unigene, DFCI Gene Index (CICLGI), version 2,released on 2009_05_22 Citrus clementina (Clementine), transcript, JGI genomic project, Phytozome, version 1 Citrus clementina , transcript, JGI genomic project, Phytozome 11, 182 v1.0 Citrus sinensis (Orange), transcript, JGI genomic project, Phytozome, phytozome V10 csinensis v1.1 Citrus sinensis (Orange), cDNA, , Latest update: 2012_11_29 Citrus sinensis (Orange), unigene, DFCI Gene Index (CSGI), version 1,released on 2008_06_25 Citrus sinensis (sweet orange group), transcript, JGI genomic project, Phytozome 12, 154_v1.1 Coccomyxa subellipsoidea (Green microalga), transcript, JGI genomic project, Phytozome 12, 169_227_v2.0 Coffea canephora (coffee), unigene, SGN unigene, SGN, version 3 Coffea canephora (coffee), unigene, DFCI Gene Index (COCAGI), version 3,released on 2011_03_18 Coprinopsis cinerea (gray shag), transcript, JGI genomic project, v1 Cucumis Melo (Muskmelon ), transcript, MELONOMICS project, version 1 Cucumis Melo (Muskmelon ), unigene, MELONOMICS project, Cucumis Melo (Muskmelon ), unigene, International Cucurbit Genomics Initiative (ICuGI), version 4 Cucumis sativus (cucumber), cds, Cucumber genome sequencing project, version 2 Cucumis sativus, transcript, JGI genomic project, Phytozome 12, 122_v1.0 Cuscuta pentagona, unigene, Cuscuta pentagona, de-novo assembly of NGS RNA-seq reads, Sinha Lab,Department of Plant Biology, Life ...... Daucus carota (wild carrot), transcript, JGI genomic project, Phytozome 12, 388_v2.0 Dunaliella salina (Green alga), transcript, JGI genomic project, Phytozome 12, 325_v1.0 Ectocarpus siliculosus (Brown algae), unigene, DFCI Gene Index (BAGI), version 1,released on 2010_05_27 Elaeis guineensis (African oil palm), transcript, (HD-40537) predicted mRNA Fasta file from Elaeis guineensis genome from NCBI, Eucalyptus grandis (Flooded gum or Rose gum), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 201 Eucalyptus grandis (Flooded gum or Rose gum), unigene, EST contig, , Eucalyptus grandis (flooded gum or rose gum), transcript, JGI genomic project, Phytozome 12, 297_v2.0 Euphorbia esula (Leafy spurge), unigene, DFCI Gene Index (EUESGI), version 1,released on 2008_06_30 Eutrema salsugineum (saltwater cress), transcript, JGI genomic project, Phytozome 12, 173_v1.0 Festuca arundinacea (tall fescue), unigene, DFCI Gene Index (FAGI), version 3,released on 2010_04_07 Festuca pratensis (Meadow ryegrass), unigene, DFCI Gene Index(MRGI), version 1,released on 2010_05_28 Fragaria vesca, transcript, JGI genomic project, Phytozome 12, 226_v1.1 Glycine max (soybean), unigene, DFCI Gene Index (GMGI), version 16,released on 2011_03_31 Glycine max (soybean), transcript, JGI genomic project, Phytozome 12, Wm82.a2.v1 Gossypium (cotton), unigene, DFCI Gene Index (CGI), version 11,released on 2011_03_22 Gossypium arboreum (tree cotton), cds, Institute of cotton resrarch of CAAS, version 2 Gossypium hirsutum, cds, , v1.1 Gossypium raimondii (cotton_raimondii), unigene, DFCI Gene Index (GORAGI), version 1,released on 2008_07_02 Gossypium raimondii (cotton_raimondii), transcript, JGI genomic project, Phytozome, phytozome v8.0,internal number 221 Gossypium raimondii (cotton_raimondii), cds, Chinese Academy of Agricultural Sciences,Cotton Research Institute, Gossypium raimondii (diploid cotton), transcript, JGI genomic project, Phytozome 12, 221_v2.1 Helianthus annuus (Sunflower), unigene, DFCI Gene Index (HAGI), version 6,released on 2009_05_24 Homo sapiens (human), transcript, Human genomic sequencing project, Hordeum vulgare (barley), unigene, DFCI Gene Index (HVGI), version 12,released on 2011_03_19 Ipomoea nil (Morning glory), unigene, DFCI Gene Index (IPNIGI), version 1,released on 2008_06_30 Kalanchoe fedtschenkoi, transcript, JGI genomic project, Phytozome 12, 382_v1.1 Kalanchoe laxiflora, transcript, JGI genomic project, Phytozome 12, 309_v1.1 Lactuca sativa (Lettuce), unigene, DFCI Gene Index (LSGI), version 3,released on 2008_07_02 Lactuca serriola (Prickly lettuce), unigene, DFCI Gene Index (LASEGI), version 1,released on 2008_06_28 Linum usitatissimum (flax or linseed), unigene, Unigene Library, Linum usitatissimum (flax or linseed), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 200 Linum usitatissimum (common flax or linseed), transcript, JGI genomic project, Phytozome 12, 200_v1.0 Lotus japonicus (lotus), unigene, DFCI Gene Index (LJGI), version 6,released on 2010_05_18 Magnaporthe oryzae (rice blast fungus), transcript, Broad institute, Magnaporthe grisea Database, Magnaporthe grisea Assembly 6 Malus domestica (Apple), transcript, JGI genomic project, Phytozome 11, 196 v1.0 Malus x domestica (apple), cds, predicted consensus gene set CDS sequences, , version 1 Malus x domestica (apple), genomic DNA, , version 1 Malus_x_domestica (apple), unigene, DFCI Gene Index (MDGI), version 3,released on 2010_04_08 Manihot esculenta (Cassava), unigene, DFCI Gene Index (MAESGI), version 1,released on 2010_05_28 Manihot esculenta, transcript, JGI genomic project, Phytozome 12, 305_v6.1 Marchantia polymorpha, transcript, JGI genomic project, Phytozome 12, 320_v3.1 Medicago truncatula (Barrel Medic), unigene, DFCI Gene index (MTGI), version 11,released on 2011_03_23 Medicago truncatula (Barrel Medic), transcript, Mt3.5v4 splice transcripts, , Medicago truncatula (Barrel Medic), transcript, Mt4.0v1 spliced transcripts, IMGAG, Mt4.0V1 Medicago truncatula, transcript, JGI genomic project, Phytozome 12, 285_Mt4.0v1 Mesembryanthemum crystallinum (ice plant), unigene, DFCI Gene Index (MCGI), version 5,released on 2008_06_19 Micromonas pusilla, transcript, JGI genomic project, Phytozome 12, CCMP1545_228_v3.0 Micromonas sp, transcript, JGI genomic project, Phytozome 12, RCC299_229_v3.0 Mimulus guttatus (Spotted monkey flower), unigene, DFCI Gene Index (MIGUGI), version 1,released on 2010_05_27 Mimulus guttatus, transcript, JGI genomic project, Phytozome 12, 256_v2.0 Mimulus lewisii (monkey flower), transcript, , LF10 Transcriptome v1.2 Morchella esculenta (common morel), transcript, JGI genomic project, Phytozome, phytozome v9.0,internal number 147 Musa acuminata (banana), cds, all gene coding sequences, Banana Genome Hub, version 1 Musa acuminata (banana), transcript, JGI genomic project, Phytozome 12, 304_v1 Musa acuminata (banana), transcript, Banana Genome Hub, v2 Nicotiana benthamiana, unigene, DFCI Gene Index (NBGI), version 4,released on 2010_04_09 Nicotiana benthamiana, transcript, draft genome 0.4.4, , Nicotiana benthamiana, transcript, Niben101, Nicotiana benthamiana, transcript, De Novo Transcriptome Sequence Assembly, Transcriptome assembly v5.1, primary transcripts corre...... Nicotiana tabacum (tobacco), unigene, DFCI Gene Index (NTGI), version 7,released on 2011_04_01 Nicotiana tabacum (tobacco), unigene, SGN unigene, Oropetium thomaeum, transcript, JGI genomic project, Phytozome 12, 386 v1.0 Oryza Sativa (rice), cDNA, rice genome annotation project, version7.0 Oryza sativa (rice), transcript, TIGR genome cDNA OSA1 Release 5(OSA1R5), version 5 Oryza sativa (rice), transcript, RAP-DB, version 1.0 Oryza sativa (rice), unigene, DFCI Gene index (OSGI), version 19,released on 2011_03_28 Oryza sativa (rice), genomic DNA, 3.4K segments from strand with 0.4K overlapped region, , Oryza sativa (rice), transcript, MSU Rice Genome Annotation, version 7 Oryza sativa (rice), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 193 Oryza sativa (rice), transcript, JGI genomic project, Phytozome 12, 323_v7.0 Oryza sativa (rice), transcript, JGI genomic project, Phytozome, phytozome v10 Oryza sativa (rice), transcript, cDNA library, Ensembl, Oryza sativa (rice), transcript, BGI rice information syst, 9311 Ostreococcus lucimarinus (Ostreococcus), transcript, JGI genomic project, Phytozome 12, 231_v2.0 Panicum hallii, transcript, JGI genomic project, Phytozome 12, 308_v2.0 Panicum virgatum (switchgrass), unigene, DFCI Gene Index (PAVIGI), version 2,released on 2011_03_24 Panicum virgatum (switchgrass), transcript, JGI genomic project, Phytozome 12, 273_v1.1 Petunia hybrida (Petunia), unigene, DFCI Gene Index (PHGI), version 3,released on 2011_03_17 Phaseolus coccineus (Scarlet bean), unigene, DFCI Gene Index (PCGI), version 1,released on 2009_05_27 Phaseolus vulgaris (bean), unigene, DFCI Gene index (PHVGI), version 4,released on 2011_03_24 Phaseolus vulgaris, transcript, JGI genomic project, Phytozome 11, 218 v1.0 Phaseolus vulgaris, transcript, JGI genomic project, Phytozome 12, 442_v2.1 Phoenix dactylifera (date palm), transcript, Date Palm Genome Draft Assembly, Version 3 Phyllostachys heterocycla (Moso Bamboo), cds, National Center for Gene Research of Chinese Academy of Sciences, Version 1 Phyllostachys heterocycla (Moso Bamboo), cds_DNA, National Center for Gene Research of Chinese Academy of Sciences, Version 1 Physcomitrella patens (moss), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 152 Physcomitrella patens (spreading earthmoss), transcript, JGI genomic project, Phytozome 12, 318_v3.3 Physcomitrella patens (moss), transcript, JGI genomic project, Phytozome, phytozome v10 Physcomitrella patens (moss), unigene, DFCI Gene Index (PPSPGI), version 1,released on 2009_05_26 Phytophthora cinnamomi (water mould), transcript, JGI genomic project, Phytozome, phytozome v10 Picea (Spruce), unigene, DFCI Gene Index (SGI), version 5,released on 2011_03_30 Pinus (pine), unigene, DFGI Gene Index (PGI), version 9,released on 2011_03_26 Pinus pinaster (maritime pine), unigene, Sustain Pine DB, version 3.0 Populus trichocarpa (poplar), unigene, DFCI Gene Index (PPLGI), version 5,released on 2010_04_16 Populus trichocarpa (poplar), genomic DNA, Genome Assembly R1.0, 3.4K segments from strand with 0.4K overlapped region, JGI genom...... Populus trichocarpa, transcript, JGI genomic project, Phytozome 12, 210_v3.0 Populus trichocarpa (poplar), transcript, JGI genomic project, Phytozome, phytozome v7.0,internal number 156 Prunus mume (Chinese plum), cds, Beijing Forestry University, Prunus persica (peach), unigene, DFCI Gene Index (PRPEGI), version 2,released on 2009_05_26 Prunus persica (peach), transcript, JGI genomic project, Phytozome 12, 298_v2.1 Quercus (oak), unigene, DFCI Gene Index (OGI), version 2,released on 2011_03_23 Raphanus sativus (Radish), unigene, DFCI Gene Index (RSGI), version 1,released on 2010_05_27 Raphanus sativus (Radish), cds, Kazusa DNA Research Institute, version 1.0 Ricinus communis, transcript, JGI genomic project, Phytozome 12, 119_v0.1 Saccharum officinarum (sugarcane), unigene, DFCI Gene Index (SOGI), version 3,released on 2010_04_09 Salix purpurea, transcript, JGI genomic project, Phytozome 12, 289_v1.0 Secale cereale (rye), unigene, DFCI Gene Index (RYEGI), version 4,released on 2008_07_03 Selaginella moellendorffii (club mosses), unigene, DFCI Gene Index (CMGI), version 1,released on 2010_05_26 Selaginella moellendorffii, transcript, JGI genomic project, Phytozome 12, 91_v1.0 Setaria italica (foxtail millet), cds, BGI sequencing project, Setaria italica (foxtail millet), cds, JGI genomic project, phytozome v9.0,internal number 164 Setaria italica (Foxtail millet), transcript, JGI genomic project, Phytozome 12, 312_v2.2 Setaria italica (foxtail millet), transcript, JGI genomic project, phytozome v10 Setaria viridis, transcript, JGI genomic project, Phytozome 12, 311_v1.1 Solanum Lycopersicon (tomato Lycopersicon ), unigene, Lycopersicon Combined (Tomato) Unigenes, SGN Unigene, unknown version Solanum Lycopersicon, transcript, SGN mRNA sequences, SGN genomic sequencing project, released on 2011_05_08 Solanum lycopersicum (tomato), transcript, cDNA library, version 2.4 Solanum lycopersicum (tomato), transcript, JGI genomic project, Phytozome 11, 225 iTAGv2.3 Solanum lycopersicum (tomato), unigene, SGN unigene, Solanum lycopersicum (tomato), unigene, DFCI Gene Index (LGI), version 13,released on 2010_04_13 Solanum lycopersicum (tomato), transcript, JGI genomic project, Phytozome 12, 390_ITAG2.4 Solanum lycopersicum (tomato), transcript, cDNA library, ITAG3.1 Solanum lycopersicum (tomato), cDNA, , v3.2 Solanum melongena (eggplant), unigene, DFCI Gene Index (SOMEGI), version1,released on 2010_05_28 Solanum tuberosum (potato), unigene, DFCI Gene Index (STGI), version 13,released on 2010_04_16 Solanum tuberosum (potato), transcript, Group Phureja DM1-3 516R44 (CIP801092) Genome 3.4 transcripts, , Solanum tuberosum (potato), transcript, JGI genomic project, Phytozome 11, 206 v3.4 Solanum tuberosum (potato), transcript, JGI genomic project, Phytozome 12, 448_v4.03 Sorghum bicolor (sorghum), transcript, JGI genomic project, Phytozome, phytozome v10 Sorghum bicolor (Sorghum), unigene, DFCI Gene Index (SBGI), version 9,released on 2008_07_25 Sorghum bicolor, transcript, JGI genomic project, Phytozome 12, 313_v3.1 Sphagnum fallax (flat-topped bogmoss), transcript, JGI genomic project, Phytozome 12, 310_v0.5 Sphagnum fallax (flat-topped bogmoss), transcript, JGI genomic project, Phytozome 11, 310_v0.5 Spirodela polyrhiza, transcript, JGI genomic project, Phytozome 12, 290_v2 Spirodela polyrhiza (duckweed), transcript, waksman institute of Microbiology, Striga hermonthica (Purple witchweed), unigene, DFCI Gene Index (SHGI), version 1,released on 2010_05_27 Thellungiella halophila (salt cress), transcript, JGI genomic project, Phytozome, phytozome v9.0,internal number 173 Thellungiella halophila (salt cress), unigene, ESTContig on PlantGDB, PlangGDB unigene, released on 2009_01_16 Theobroma cacao (cocoa), unigene, DFCI Gene Index (TCAGI), version 3,released on 2009_05_21 Theobroma cacao (cacao tree), transcript, JGI genomic project, Phytozome 12, 233_v1.1 Trifolium pratense (red clover), transcript, JGI genomic project, Phytozome 12, 385 v2 Triphysaria, unigene, DFCI Gene Index (TRIPHGI), version 1,released on 2008_08_15 Triphysaria versicolor, unigene, DFCI Gene Index (TVERGI), version 2,released on 2008_06_28 Triticum aestivum (wheat), unigene, DFCI Gene Index (TAGI), version 12,released on 2010_04_18 Triticum aestivum (wheat), cDNA, EnsemblPlants, release-31 Triticum aestivum (bread wheat), transcript, cDNA library, TGACv1 Vaccinium macrocarpon (American cranberry), transcript, , Vaccinium macrocarpon (American cranberry), transcript, De Novo Transcriptome Sequence Assembly, de novo transcriptome assembly ve...... Vicia Faba (broad bean), transcript, CSFL Faba Bean RefTrans combines published RNA-Seq and EST data sets to create a reference tr...... Vicia Faba (broad bean), transcript, CSFL Faba Bean RefTrans combines published RNA-Seq and EST data sets to create a reference tr...... Vigna unguiculata (cowpea), unigene, DFCI Gene Index (VUGI), version 1,released on 2010_05_27 Vitis vinifera (grape), unigene, DFCI Gene Index (VVGI), version 8,released on 2011_04_02 Vitis vinifera (grape), transcript, JGI genomic project, Phytozome, phytozome v9, internal number 145 Vitis vinifera (grape vine), transcript, JGI genomic project, Phytozome 12, 145_Genoscope.12X Volvox carteri (green algae), unigene, DFCI Gene Index (VCGI), version 1, released on 2010_05_28 Volvox carteri (Green alga), transcript, JGI genomic project, Phytozome 12, 317_v2.1 Zea Mays (corn), cDNA, , AGPv4 Zea mays (maize), unigene, DFCI Gene Index (ZMGI), version 19,released on 2009_06_05 Zea mays (maize), cds, PlangGDB genomic project, Zea mays (maize), transcript, NSF-funded Maize Genome Sequencing Project, Release 5a , filtered set Zea mays (maize), transcript, EMBL-EBI Ensembl Genomes, AGPv3.22 Zea mays (corn), transcript, JGI genomic project, Phytozome 12, Ensembl-18_2010-01-MaizeSequence Zea mays (corn), transcript, JGI genomic project, Phytozome 12, PH207_443_v1.1 Zostera marina, transcript, JGI genomic project, Phytozome 12, 324 v2.2 brassica napus (rape), transcript, Brassica database (BRAD), Brapa_genome_data_v1.5 brassica napus (rape), transcript, , version 5 fusarium oxysporum (fusarium oxysporum), transcript, Broad institute, 4287 vitis vinifera (wine grape), transcript, Wine grape genomic sequencing project, V1 vitis vinifera (grape), transcript, university of Padua CRIBI Genomics, V2.1