To support the continuous development of PlantTFcat, please cite: Xinbin Dai, Senjuti Sinharoy, Michael K. Udvardi and Patrick X. Zhao, PlantTFcat: An Online Plant Transcription Factor and Transcriptional Regulator Categorization and Analysis Tool, BMC Bioinformatics, 2013, 14:321, doi:10.1186/1471-2105-14-321.
The Zhao Bioinformatics Laboratory
PlantTFcat: An Online Plant Transcription Factor and Transcriptional Regulator Categorization and Analysis Tool   
  About Analysis Family Help
Location:  Details of JmjC family

  JmjC
Family Type Transcription factor & chromatin remodeling &Metalloenzymes
Plant Specific No
Functional Domains DNA binding domain
Must-have InterProScan Domain Pattern IPR003347
Prohibited InterProScan Domain Pattern IPR001606 IPR009071
Description

In many diverse species including bacteria, fungi, plants, and animals, contains jumanji protein family. Many jumonji
family proteins that have only the jmjC domain or may both jmjC and jmjN domains. JmjC domain containing proteins have been shown to be involved in chromatin remodeling, acting as histone demethylases. Resent discovery highlighted that a JmjC domain-containing protein functions as a circadian clock component and controls flower development in Arabidopsis.

Reference:

1. S. X. Lu, E. M. Tobin, Chromatin remodeling and the circadian clock: Jumonji C-domain containing proteins. Plant Signal Behav 6, 810 (2011).

2. B. Noh, S. H. Lee, H. J. Kim, G. Yi, E. A. Shin, M. Lee, K. J. Jung, M. R. Doyle, R. M. Amasino, Y. S. Noh, Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time. Plant Cell 16, 2601 (2004)

Cross-reference to other databases

The family is the synonymous family of Jumonji in PlnTFDB.



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