To support the continuous development of PlantTFcat, please cite: Xinbin Dai, Senjuti Sinharoy, Michael K. Udvardi and Patrick X. Zhao, PlantTFcat: An Online Plant Transcription Factor and Transcriptional Regulator Categorization and Analysis Tool, BMC Bioinformatics, 2013, 14:321, doi:10.1186/1471-2105-14-321.
The Zhao Bioinformatics Laboratory
PlantTFcat: An Online Plant Transcription Factor and Transcriptional Regulator Categorization and Analysis Tool   
  About Analysis Family Help
Location:  Details of ARID-HMG family

  ARID-HMG
Family Type Transcription factor & chromatin remodeling
Plant Specific No
Functional Domains DNA binding domain
Must-have InterProScan Domain Pattern IPR009071 and IPR001606
Prohibited InterProScan Domain Pattern IPR003349 IPR003347
Description

The ARID (AT-rich interaction domain) is an ancient DNA-binding domain that has been identified in all sequenced higher eukaryotic genomes, including plant. The ARID consensus contains ~100 amino acid residues. High mobility group (HMG)-box domain has been identified in a wide variety of eukaryotic DNA-binding proteins including transcription factors and subunits of chromatin remodeling complexes. Both HMG box and ARID DNA binding domain has been present together in some families appear to be specific for plants.

Reference:

1. D. Wilsker, L. Probst, H. M. Wain, L. Maltais, P. W. Tucker, E. Moran, Nomenclature of the ARID family of DNA-binding proteins. Genomics 86, 242 (2005) 2. F. T. Hansen, C. K. Madsen, A. M. Nordland, M. Grasser, T. Merkle, K. D. Grasser, A novel family of plant DNA-binding proteins containing both HMG-box and AT-rich interaction domains. Biochemistry 47, 13207 (2008)

Cross-reference to other databases

The family is the subfamily family of ARID in PlnTFDB.



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